J3_7NWI_026
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7NWI|1|9|G|1274, 7NWI|1|9|G|1507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWI_026 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1627
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7NWI|1|9|C|1272
7NWI|1|9|C|1273
7NWI|1|9|G|1274
7NWI|1|9|G|1275
7NWI|1|9|A|1276
7NWI|1|9|C|1277
*
7NWI|1|9|G|1320
7NWI|1|9|G|1321
7NWI|1|9|G|1322
7NWI|1|9|U|1323
7NWI|1|9|G|1324
*
7NWI|1|9|U|1504
7NWI|1|9|U|1505
7NWI|1|9|A|1506
7NWI|1|9|G|1507
7NWI|1|9|A|1508
7NWI|1|9|U|1509
7NWI|1|9|G|1510
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain KK
- S10_plectin domain-containing protein
- Chain dd
- ribosomal protein uS14
- Chain ff
- S27a
Coloring options: