J3_7NWI_033
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UU*AGAAG*CGUGG
- Length
- 12 nucleotides
- Bulged bases
- 7NWI|1|5|A|1805, 7NWI|1|5|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWI_033 not in the Motif Atlas
- Homologous match to J3_9PN5_010
- Geometric discrepancy: 0.4131
- The information below is about J3_9PN5_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_22278.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NWI|1|5|U|1726
7NWI|1|5|U|1727
*
7NWI|1|5|A|1802
7NWI|1|5|G|1803
7NWI|1|5|A|1804
7NWI|1|5|A|1805
7NWI|1|5|G|1806
*
7NWI|1|5|C|1832
7NWI|1|5|G|1833
7NWI|1|5|U|1834
7NWI|1|5|G|1835
7NWI|1|5|G|1836
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain F
- uL30
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
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