3D structure

PDB id
7NWT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
7NWT|1|2|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NWT_016 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0543
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

7NWT|1|2|C|826
7NWT|1|2|U|827
7NWT|1|2|U|828
7NWT|1|2|G|829
*
7NWT|1|2|C|857
7NWT|1|2|G|858
7NWT|1|2|G|859
7NWT|1|2|A|860
7NWT|1|2|G|861
*
7NWT|1|2|C|868
7NWT|1|2|G|869
7NWT|1|2|U|870
7NWT|1|2|U|871
7NWT|1|2|A|872
7NWT|1|2|A|873
7NWT|1|2|G|874

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S2
Chain m
30S ribosomal protein S8
Chain z
30S ribosomal protein S21

Coloring options:


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