J3_7NWW_025

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7NWW|1|2|U|1240, 7NWW|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWW_025 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1346

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7NWW|1|2|C|1237
7NWW|1|2|A|1238
7NWW|1|2|A|1239
7NWW|1|2|U|1240
7NWW|1|2|G|1241
*
7NWW|1|2|C|1296
7NWW|1|2|G|1297
7NWW|1|2|U|1298
7NWW|1|2|A|1299
7NWW|1|2|G|1300
7NWW|1|2|U|1301
7NWW|1|2|C|1302
7NWW|1|2|C|1303
*
7NWW|1|2|G|1334
7NWW|1|2|U|1335
7NWW|1|2|C|1336
7NWW|1|2|G|1337

Current chains

Chain 2

16S rRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13