J3_7NWW_032

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7NWW|1|2|C|48, 7NWW|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWW_032 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.087

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7NWW|1|2|G|46
7NWW|1|2|C|47
7NWW|1|2|C|48
7NWW|1|2|U|49
7NWW|1|2|A|50
7NWW|1|2|A|51
7NWW|1|2|C|52
*
7NWW|1|2|G|359
7NWW|1|2|G|360
7NWW|1|2|G|361
7NWW|1|2|G|362
7NWW|1|2|A|363
7NWW|1|2|A|364
7NWW|1|2|U|365
7NWW|1|2|A|366
7NWW|1|2|U|367
*
7NWW|1|2|A|393
7NWW|1|2|G|394
7NWW|1|2|C|395

Current chains

Chain 2

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain t

30S ribosomal protein S16