3D structure

PDB id
7O19 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
7O19|1|AA|U|1240, 7O19|1|AA|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O19_012 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.131
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

7O19|1|AA|C|1237
7O19|1|AA|A|1238
7O19|1|AA|A|1239
7O19|1|AA|U|1240
7O19|1|AA|G|1241
*
7O19|1|AA|C|1296
7O19|1|AA|G|1297
7O19|1|AA|U|1298
7O19|1|AA|A|1299
7O19|1|AA|G|1300
7O19|1|AA|U|1301
7O19|1|AA|C|1302
7O19|1|AA|C|1303
*
7O19|1|AA|G|1334
7O19|1|AA|U|1335
7O19|1|AA|C|1336
7O19|1|AA|G|1337

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AM
30S ribosomal protein S13

Coloring options:


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