J3_7O19_030

3D structure

PDB id

7O19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

7O19|1|AA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O19_030 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1028

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7O19|1|AA|U|1073
7O19|1|AA|G|1074
*
7O19|1|AA|U|1083
7O19|1|AA|G|1084
7O19|1|AA|U|1085
7O19|1|AA|U|1086
*
7O19|1|AA|G|1099
7O19|1|AA|C|1100
7O19|1|AA|A|1101
7O19|1|AA|A|1102

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5