J3_7O1A_004

3D structure

PDB id

7O1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7O1A|1|AA|U|871, 7O1A|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O1A_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0592

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7O1A|1|AA|C|826
7O1A|1|AA|U|827
7O1A|1|AA|U|828
7O1A|1|AA|G|829
*
7O1A|1|AA|C|857
7O1A|1|AA|G|858
7O1A|1|AA|G|859
7O1A|1|AA|A|860
7O1A|1|AA|G|861
*
7O1A|1|AA|C|868
7O1A|1|AA|G|869
7O1A|1|AA|U|870
7O1A|1|AA|U|871
7O1A|1|AA|A|872
7O1A|1|AA|A|873
7O1A|1|AA|G|874

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21