J3_7O1C_005

3D structure

PDB id

7O1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O1C_005 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1085

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7O1C|1|AA|U|943
7O1C|1|AA|G|944
7O1C|1|AA|G|945
7O1C|1|AA|A|946
*
7O1C|1|AA|U|1235
7O1C|1|AA|A|1236
7O1C|1|AA|C|1237
*
7O1C|1|AA|G|1337
7O1C|1|AA|G|1338
7O1C|1|AA|A|1339
7O1C|1|AA|A|1340

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain B8

Transfer RNA; tRNA