J3_7O5B_004

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

7O5B|1|A|U|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1611

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7O5B|1|A|C|835
7O5B|1|A|U|836
7O5B|1|A|A|837
7O5B|1|A|A|838
*
7O5B|1|A|U|867
7O5B|1|A|G|868
7O5B|1|A|C|869
7O5B|1|A|A|870
7O5B|1|A|G|871
*
7O5B|1|A|C|878
7O5B|1|A|A|879
7O5B|1|A|U|880
7O5B|1|A|U|881
7O5B|1|A|A|882
7O5B|1|A|A|883
7O5B|1|A|G|884

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8