J3_7O5B_017

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7O5B|1|X|U|733, 7O5B|1|X|G|839, 7O5B|1|X|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_017 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.1055

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

7O5B|1|X|U|730
7O5B|1|X|G|731
7O5B|1|X|A|732
7O5B|1|X|U|733
7O5B|1|X|C|734
7O5B|1|X|U|735
7O5B|1|X|A|736
*
7O5B|1|X|U|820
7O5B|1|X|A|821
7O5B|1|X|G|822
*
7O5B|1|X|C|838
7O5B|1|X|G|839
7O5B|1|X|A|840
7O5B|1|X|A|841

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Z

50S ribosomal protein L2