J3_7O5B_028
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7O5B|1|A|C|50, 7O5B|1|A|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_028 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1235
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|A|G|48
7O5B|1|A|C|49
7O5B|1|A|C|50
7O5B|1|A|U|51
7O5B|1|A|A|52
7O5B|1|A|A|53
7O5B|1|A|U|54
*
7O5B|1|A|A|367
7O5B|1|A|G|368
7O5B|1|A|G|369
7O5B|1|A|G|370
7O5B|1|A|A|371
7O5B|1|A|A|372
7O5B|1|A|U|373
7O5B|1|A|C|374
7O5B|1|A|U|375
*
7O5B|1|A|A|401
7O5B|1|A|G|402
7O5B|1|A|C|403
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: