J3_7O5B_032

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

7O5B|1|A|U|1221, 7O5B|1|A|U|1223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_032 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.3839

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7O5B|1|A|C|1000
7O5B|1|A|U|1001
7O5B|1|A|U|1002
7O5B|1|A|G|1003
7O5B|1|A|A|1004
7O5B|1|A|C|1005
7O5B|1|A|A|1006
7O5B|1|A|U|1007
*
7O5B|1|A|A|1054
7O5B|1|A|C|1055
7O5B|1|A|A|1056
7O5B|1|A|G|1057
*
7O5B|1|A|C|1219
7O5B|1|A|U|1220
7O5B|1|A|U|1221
7O5B|1|A|A|1222
7O5B|1|A|U|1223
7O5B|1|A|G|1224

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain N

30S ribosomal protein S14