J3_7O7Y_026
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 7O7Y|1|B5|C|3844, 7O7Y|1|B5|U|3845, 7O7Y|1|B5|U|3846, 7O7Y|1|B5|G|3849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O7Y_026 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.3177
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7O7Y|1|B5|G|3819
7O7Y|1|B5|G|3820
7O7Y|1|B5|G|3821
7O7Y|1|B5|G|3822
*
7O7Y|1|B5|C|3842
7O7Y|1|B5|G|3843
7O7Y|1|B5|C|3844
7O7Y|1|B5|U|3845
7O7Y|1|B5|U|3846
7O7Y|1|B5|C|3847
7O7Y|1|B5|U|3848
7O7Y|1|B5|G|3849
7O7Y|1|B5|G|3850
7O7Y|1|B5|C|3851
7O7Y|1|B5|G|3852
7O7Y|1|B5|C|3853
7O7Y|1|B5|C|3854
7O7Y|1|B5|A|3855
7O7Y|1|B5|A|3856
7O7Y|1|B5|G|3857
*
7O7Y|1|B5|C|3901
7O7Y|1|B5|G|3902
7O7Y|1|B5|A|3903
7O7Y|1|B5|C|3904
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Ribosomal protein uL2
- Chain BG
- Ribosomal protein eL8
- Chain BX
- uL23
- Chain BZ
- 60S ribosomal protein L27
- Chain Bc
- eL30
- Chain Bg
- 60S ribosomal protein L34
- Chain Bp
- eL43
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