J3_7O7Y_036
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 7O7Y|1|A2|G|992
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O7Y_036 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1643
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7O7Y|1|A2|A|939
7O7Y|1|A2|U|940
7O7Y|1|A2|U|941
7O7Y|1|A2|C|942
*
7O7Y|1|A2|G|986
7O7Y|1|A2|G|987
7O7Y|1|A2|A|988
7O7Y|1|A2|C|989
7O7Y|1|A2|C|990
7O7Y|1|A2|A|991
7O7Y|1|A2|G|992
7O7Y|1|A2|A|993
7O7Y|1|A2|G|994
*
7O7Y|1|A2|C|1001
7O7Y|1|A2|A|1002
7O7Y|1|A2|U|1003
7O7Y|1|A2|U|1004
7O7Y|1|A2|PSU|1005
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Ribosomal protein eS26
- Chain Aa
- 40S ribosomal protein S3a
- Chain Am
- uS15
- Chain An
- 40S ribosomal protein uS11
- Chain BA
- Ribosomal protein uL2
- Chain Bp
- eL43
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