J3_7O7Z_003

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1902

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7O7Z|1|A2|A|817
7O7Z|1|A2|G|818
7O7Z|1|A2|A|819
7O7Z|1|A2|G|820
*
7O7Z|1|A2|C|830
7O7Z|1|A2|A|831
7O7Z|1|A2|G|832
*
7O7Z|1|A2|C|844
7O7Z|1|A2|U|845
7O7Z|1|A2|G|846
7O7Z|1|A2|G|847
7O7Z|1|A2|A|848
7O7Z|1|A2|U|849

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24