J3_7O7Z_006
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 7O7Z|1|A2|A|1680
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O7Z_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1129
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7O7Z|1|A2|C|1219
7O7Z|1|A2|C|1220
7O7Z|1|A2|A|1221
7O7Z|1|A2|G|1222
*
7O7Z|1|A2|C|1646
7O7Z|1|A2|C|1647
7O7Z|1|A2|A|1648
7O7Z|1|A2|G|1649
7O7Z|1|A2|U|1650
7O7Z|1|A2|A|1651
7O7Z|1|A2|A|1652
*
7O7Z|1|A2|U|1674
7O7Z|1|A2|G|1675
7O7Z|1|A2|A|1676
7O7Z|1|A2|U|1677
7O7Z|1|A2|U|1678
7O7Z|1|A2|A2M|1679
7O7Z|1|A2|A|1680
7O7Z|1|A2|G|1681
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AB
- Ribosomal protein S28
- Chain AI
- E-site tRNA
- Chain Ae
- Ribosomal protein S5
- Chain Ap
- uS9
Coloring options: