J3_7O7Z_009

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7O7Z|1|A2|G|1275, 7O7Z|1|A2|G|1508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1063

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7O7Z|1|A2|C|1273
7O7Z|1|A2|C|1274
7O7Z|1|A2|G|1275
7O7Z|1|A2|G|1276
7O7Z|1|A2|A|1277
7O7Z|1|A2|C|1278
*
7O7Z|1|A2|G|1321
7O7Z|1|A2|G|1322
7O7Z|1|A2|G|1323
7O7Z|1|A2|U|1324
7O7Z|1|A2|G|1325
*
7O7Z|1|A2|U|1505
7O7Z|1|A2|U|1506
7O7Z|1|A2|A|1507
7O7Z|1|A2|G|1508
7O7Z|1|A2|A|1509
7O7Z|1|A2|U|1510
7O7Z|1|A2|G|1511

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain Aj

eS10