3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CACUG*CGUGAUGG*CGAG
Length
17 nucleotides
Bulged bases
7O7Z|1|A2|U|1536, 7O7Z|1|A2|G|1604
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O7Z_013 not in the Motif Atlas
Homologous match to J3_8C3A_044
Geometric discrepancy: 0.1331
The information below is about J3_8C3A_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.4
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
Number of instances in this motif group
5

Unit IDs

7O7Z|1|A2|C|1533
7O7Z|1|A2|A|1534
7O7Z|1|A2|C|1535
7O7Z|1|A2|U|1536
7O7Z|1|A2|G|1537
*
7O7Z|1|A2|C|1598
7O7Z|1|A2|G|1599
7O7Z|1|A2|U|1600
7O7Z|1|A2|G|1601
7O7Z|1|A2|A|1602
7O7Z|1|A2|U|1603
7O7Z|1|A2|G|1604
7O7Z|1|A2|G|1605
*
7O7Z|1|A2|C|1636
7O7Z|1|A2|G|1637
7O7Z|1|A2|A|1638
7O7Z|1|A2|G|1639

Current chains

Chain A2
18S rRNA

Nearby chains

Chain Ae
Ribosomal protein S5
Chain Ar
40S ribosomal protein S18
Chain As
Ribosomal protein eS19
Chain Ay
40S ribosomal protein S25

Coloring options:


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