J3_7O7Z_018

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

7O7Z|1|B5|A|1744, 7O7Z|1|B5|U|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_018 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5274

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7O7Z|1|B5|U|1665
7O7Z|1|B5|U|1666
*
7O7Z|1|B5|A|1741
7O7Z|1|B5|G|1742
7O7Z|1|B5|A|1743
7O7Z|1|B5|A|1744
7O7Z|1|B5|G|1745
*
7O7Z|1|B5|C|1771
7O7Z|1|B5|G|1772
7O7Z|1|B5|U|1773
7O7Z|1|B5|G|1774
7O7Z|1|B5|G|1775
7O7Z|1|B5|A|1776

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BT

eL21

Chain Bb

60S ribosomal protein L29