J3_7O7Z_020

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7O7Z|1|B5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_020 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0761

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|C|2236
7O7Z|1|B5|G|2237
7O7Z|1|B5|A|2238
7O7Z|1|B5|A|2239
7O7Z|1|B5|G|2240
7O7Z|1|B5|U|2241
7O7Z|1|B5|G|2242
*
7O7Z|1|B5|C|2648
7O7Z|1|B5|A|2649
7O7Z|1|B5|A|2650
*
7O7Z|1|B5|U|2662
7O7Z|1|B5|C|2663
7O7Z|1|B5|U|2664
7O7Z|1|B5|G|2665

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain Bg

60S ribosomal protein L34