J3_7O7Z_021

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

7O7Z|1|B5|U|2631, 7O7Z|1|B5|A|2632

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_021 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.0854

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|G|2245
7O7Z|1|B5|A|2246
7O7Z|1|B5|A|2247
7O7Z|1|B5|G|2248
*
7O7Z|1|B5|C|2628
7O7Z|1|B5|C|2629
7O7Z|1|B5|A2M|2630
7O7Z|1|B5|U|2631
7O7Z|1|B5|A|2632
7O7Z|1|B5|U|2633
7O7Z|1|B5|C|2634
*
7O7Z|1|B5|G|2643
7O7Z|1|B5|U|2644
7O7Z|1|B5|C|2645

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34

Chain Bj

Ribosomal protein L37

Chain Bl

eL39