3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UG*CGACC*GA
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O7Z_024 not in the Motif Atlas
Homologous match to J3_8C3A_054
Geometric discrepancy: 0.2608
The information below is about J3_8C3A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16991.1
Basepair signature
cWW-F-cWW-F-F-cWW
Number of instances in this motif group
3

Unit IDs

7O7Z|1|B5|U|2418
7O7Z|1|B5|G|2419
*
7O7Z|1|B5|C|2428
7O7Z|1|B5|G|2429
7O7Z|1|B5|A|2430
7O7Z|1|B5|C|2431
7O7Z|1|B5|C|2432
*
7O7Z|1|B5|G|2599
7O7Z|1|B5|A|2600

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BZ
60S ribosomal protein L27
Chain Bg
60S ribosomal protein L34

Coloring options:


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