J3_7O7Z_024

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_024 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2608

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|U|2418
7O7Z|1|B5|G|2419
*
7O7Z|1|B5|C|2428
7O7Z|1|B5|G|2429
7O7Z|1|B5|A|2430
7O7Z|1|B5|C|2431
7O7Z|1|B5|C|2432
*
7O7Z|1|B5|G|2599
7O7Z|1|B5|A|2600

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34