J3_7O7Z_026

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

7O7Z|1|B5|C|3844, 7O7Z|1|B5|U|3845, 7O7Z|1|B5|U|3846, 7O7Z|1|B5|C|3847, 7O7Z|1|B5|U|3848, 7O7Z|1|B5|G|3849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_026 not in the Motif Atlas

Homologous match to J3_8P9A_060

Geometric discrepancy: 0.3177

The information below is about J3_8P9A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7O7Z|1|B5|G|3819
7O7Z|1|B5|G|3820
7O7Z|1|B5|G|3821
7O7Z|1|B5|G|3822
*
7O7Z|1|B5|C|3842
7O7Z|1|B5|G|3843
7O7Z|1|B5|C|3844
7O7Z|1|B5|U|3845
7O7Z|1|B5|U|3846
7O7Z|1|B5|C|3847
7O7Z|1|B5|U|3848
7O7Z|1|B5|G|3849
7O7Z|1|B5|G|3850
7O7Z|1|B5|C|3851
7O7Z|1|B5|G|3852
7O7Z|1|B5|C|3853
7O7Z|1|B5|C|3854
7O7Z|1|B5|A|3855
7O7Z|1|B5|A|3856
7O7Z|1|B5|G|3857
*
7O7Z|1|B5|C|3901
7O7Z|1|B5|G|3902
7O7Z|1|B5|A|3903
7O7Z|1|B5|C|3904

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BG

Ribosomal protein eL8

Chain BX

uL23

Chain BZ

60S ribosomal protein L27

Chain Bc

eL30

Chain Bg

60S ribosomal protein L34

Chain Bp

eL43