3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUC*GAG*CAAAAG
Length
12 nucleotides
Bulged bases
7O7Z|1|B5|A|4026
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O7Z_027 not in the Motif Atlas
Homologous match to J3_5TBW_013
Geometric discrepancy: 0.0794
The information below is about J3_5TBW_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

7O7Z|1|B5|C|3987
7O7Z|1|B5|U|3988
7O7Z|1|B5|C|3989
*
7O7Z|1|B5|G|4013
7O7Z|1|B5|A|4014
7O7Z|1|B5|G|4015
*
7O7Z|1|B5|C|4024
7O7Z|1|B5|A|4025
7O7Z|1|B5|A|4026
7O7Z|1|B5|A|4027
7O7Z|1|B5|A|4028
7O7Z|1|B5|G|4029

Current chains

Chain B5
28S rRNA

Nearby chains

Chain AT
Transfer RNA; tRNA
Chain B7
5S ribosomal RNA; 5S rRNA
Chain BD
Ribosomal_L18_c domain-containing protein
Chain BJ
Ribosomal protein L11
Chain BT
eL21
Chain Bo
eL42

Coloring options:


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