J3_7O7Z_028

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7O7Z|1|B5|A|4210, 7O7Z|1|B5|U|4211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_028 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0739

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7O7Z|1|B5|U|4209
7O7Z|1|B5|A|4210
7O7Z|1|B5|U|4211
7O7Z|1|B5|C|4212
*
7O7Z|1|B5|G|4237
7O7Z|1|B5|U|4238
7O7Z|1|B5|U|4239
*
7O7Z|1|B5|A|4253
7O7Z|1|B5|C|4254
7O7Z|1|B5|U|4255
7O7Z|1|B5|A|4256
7O7Z|1|B5|A|4257
7O7Z|1|B5|U|4258
7O7Z|1|B5|A|4259

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23