J3_7O7Z_030

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

7O7Z|1|B7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_030 not in the Motif Atlas

Homologous match to J3_5TBW_045

Geometric discrepancy: 0.0778

The information below is about J3_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7O7Z|1|B7|C|9
7O7Z|1|B7|C|10
7O7Z|1|B7|A|11
7O7Z|1|B7|U|12
7O7Z|1|B7|A|13
7O7Z|1|B7|C|14
*
7O7Z|1|B7|G|65
7O7Z|1|B7|G|66
*
7O7Z|1|B7|U|109
7O7Z|1|B7|G|110

Current chains

Chain B7

5S

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

60S ribosomal protein L10

Chain BT

eL21