J3_7O7Z_031
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 7O7Z|1|B8|A|62, 7O7Z|1|B8|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O7Z_031 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1702
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7O7Z|1|B8|A|44
7O7Z|1|B8|C|45
*
7O7Z|1|B8|G|58
7O7Z|1|B8|A|59
7O7Z|1|B8|G|60
7O7Z|1|B8|A|61
7O7Z|1|B8|A|62
7O7Z|1|B8|U|63
7O7Z|1|B8|U|64
*
7O7Z|1|B8|A|95
7O7Z|1|B8|C|96
7O7Z|1|B8|A|97
7O7Z|1|B8|C|98
7O7Z|1|B8|U|99
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- uL23
- Chain Bh
- uL29
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
Coloring options: