J3_7O80_007
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGA*UAC*G(G7M)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O80_007 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1003
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O80|1|A2|U|1226
7O80|1|A2|G|1227
7O80|1|A2|G|1228
7O80|1|A2|A|1229
*
7O80|1|A2|U|1531
7O80|1|A2|A|1532
7O80|1|A2|C|1533
*
7O80|1|A2|G|1639
7O80|1|A2|G7M|1640
7O80|1|A2|A|1641
7O80|1|A2|A|1642
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AI
- E-site tRNA
- Chain AT
- Transfer RNA; tRNA
- Chain Ae
- Ribosomal protein S5
- Chain Ap
- Ribosomal protein S16
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- Ribosomal protein eS19
- Chain Ay
- 40S ribosomal protein S25
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