J3_7O80_017
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAG*CG(PSU)AG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O80_017 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.2442
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7O80|1|B5|C|1501
7O80|1|B5|A|1502
7O80|1|B5|G|1503
*
7O80|1|B5|C|1535
7O80|1|B5|G|1536
7O80|1|B5|PSU|1537
7O80|1|B5|A|1538
7O80|1|B5|G|1539
*
7O80|1|B5|U|1564
7O80|1|B5|C|1565
7O80|1|B5|C|1566
7O80|1|B5|G|1567
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Ribosomal protein uL2
- Chain BR
- 60S ribosomal protein L19
- Chain Bg
- 60S ribosomal protein L34
- Chain Bp
- eL43
Coloring options: