J3_7O80_025
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O80_025 not in the Motif Atlas
- Geometric match to J3_8VTW_006
- Geometric discrepancy: 0.1324
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
7O80|1|B5|C|3669
7O80|1|B5|G|3670
7O80|1|B5|G|3671
*
7O80|1|B5|C|3802
7O80|1|B5|U|3803
7O80|1|B5|G|3804
7O80|1|B5|A|3805
7O80|1|B5|C|3806
*
7O80|1|B5|G|3914
7O80|1|B5|G|3915
7O80|1|B5|A|3916
7O80|1|B5|C|3917
7O80|1|B5|A|3918
7O80|1|B5|G|3919
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Ribosomal protein uL2
- Chain BG
- Ribosomal protein eL8
- Chain BN
- Ribosomal protein L15
- Chain Bi
- 60S ribosomal protein L36
Coloring options: