J3_7O80_046

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7O80|1|B5|U|4621, 7O80|1|B5|A|4677, 7O80|1|B5|C|4679, 7O80|1|B5|A|4682, 7O80|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|B5|G|4498
7O80|1|B5|U|4499
7O80|1|B5|U|4500
7O80|1|B5|G|4501
*
7O80|1|B5|C|4618
7O80|1|B5|C|4619
7O80|1|B5|U|4620
7O80|1|B5|U|4621
7O80|1|B5|C|4622
*
7O80|1|B5|G|4675
7O80|1|B5|C|4676
7O80|1|B5|A|4677
7O80|1|B5|C|4678
7O80|1|B5|C|4679
7O80|1|B5|G|4680
7O80|1|B5|C|4681
7O80|1|B5|A|4682
7O80|1|B5|C|4683
7O80|1|B5|G|4684
7O80|1|B5|U|4685
7O80|1|B5|U|4686
7O80|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

Ribosomal protein L14

Chain BO

Ribosomal protein L13a

Chain Bf

eL33