J3_7O81_003

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O81_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2053

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7O81|1|A2|A|817
7O81|1|A2|G|818
7O81|1|A2|A|819
7O81|1|A2|G|820
*
7O81|1|A2|C|830
7O81|1|A2|A|831
7O81|1|A2|G|832
*
7O81|1|A2|C|844
7O81|1|A2|U|845
7O81|1|A2|G|846
7O81|1|A2|G|847
7O81|1|A2|A|848
7O81|1|A2|U|849

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24