J3_7O81_006

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

7O81|1|A2|A|1680

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O81_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1411

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7O81|1|A2|C|1219
7O81|1|A2|C|1220
7O81|1|A2|A|1221
7O81|1|A2|G|1222
*
7O81|1|A2|C|1646
7O81|1|A2|C|1647
7O81|1|A2|A|1648
7O81|1|A2|G|1649
7O81|1|A2|U|1650
7O81|1|A2|A|1651
7O81|1|A2|A|1652
*
7O81|1|A2|U|1674
7O81|1|A2|G|1675
7O81|1|A2|A|1676
7O81|1|A2|U|1677
7O81|1|A2|U|1678
7O81|1|A2|A2M|1679
7O81|1|A2|A|1680
7O81|1|A2|G|1681

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

Ribosomal protein S28

Chain Ae

Ribosomal protein S5

Chain Ap

uS9