J3_7O81_012
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 7O81|1|A2|U|1536, 7O81|1|A2|G|1604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_012 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.145
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7O81|1|A2|C|1533
7O81|1|A2|A|1534
7O81|1|A2|C|1535
7O81|1|A2|U|1536
7O81|1|A2|G|1537
*
7O81|1|A2|C|1598
7O81|1|A2|G|1599
7O81|1|A2|U|1600
7O81|1|A2|G|1601
7O81|1|A2|A|1602
7O81|1|A2|U|1603
7O81|1|A2|G|1604
7O81|1|A2|G|1605
*
7O81|1|A2|C|1636
7O81|1|A2|G|1637
7O81|1|A2|A|1638
7O81|1|A2|G|1639
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ae
- Ribosomal protein S5
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- Ribosomal protein eS19
- Chain Ay
- 40S ribosomal protein S25
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