J3_7O81_015
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7O81|1|B5|C|1490, 7O81|1|B5|G|1596
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_015 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1684
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|B5|U|1486
7O81|1|B5|G|1487
7O81|1|B5|A|1488
7O81|1|B5|A2M|1489
7O81|1|B5|C|1490
7O81|1|B5|PSU|1491
7O81|1|B5|A|1492
*
7O81|1|B5|U|1577
7O81|1|B5|A|1578
7O81|1|B5|G|1579
*
7O81|1|B5|C|1595
7O81|1|B5|G|1596
7O81|1|B5|A|1597
7O81|1|B5|A|1598
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Ribosomal protein uL2
- Chain BK
- Replicase polyprotein 1ab
- Chain BN
- Ribosomal protein L15
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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