J3_7O81_020

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

7O81|1|B5|U|2631, 7O81|1|B5|A|2632

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O81_020 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.1058

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7O81|1|B5|G|2245
7O81|1|B5|A|2246
7O81|1|B5|A|2247
7O81|1|B5|G|2248
*
7O81|1|B5|C|2628
7O81|1|B5|C|2629
7O81|1|B5|A2M|2630
7O81|1|B5|U|2631
7O81|1|B5|A|2632
7O81|1|B5|U|2633
7O81|1|B5|C|2634
*
7O81|1|B5|G|2643
7O81|1|B5|U|2644
7O81|1|B5|C|2645

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34

Chain Bj

Ribosomal protein L37

Chain Bl

eL39