J3_7O81_026
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7O81|1|B5|A|4026, 7O81|1|B5|A|4028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_026 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.1155
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|B5|C|3987
7O81|1|B5|U|3988
7O81|1|B5|C|3989
*
7O81|1|B5|G|4013
7O81|1|B5|A|4014
7O81|1|B5|G|4015
*
7O81|1|B5|C|4024
7O81|1|B5|A|4025
7O81|1|B5|A|4026
7O81|1|B5|A|4027
7O81|1|B5|A|4028
7O81|1|B5|G|4029
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BJ
- Ribosomal protein L11
- Chain BT
- eL21
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