J3_7O81_027
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 7O81|1|B5|A|4210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_027 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.0913
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|B5|U|4209
7O81|1|B5|A|4210
7O81|1|B5|U|4211
7O81|1|B5|C|4212
*
7O81|1|B5|G|4237
7O81|1|B5|U|4238
7O81|1|B5|U|4239
*
7O81|1|B5|A|4253
7O81|1|B5|C|4254
7O81|1|B5|U|4255
7O81|1|B5|A|4256
7O81|1|B5|A|4257
7O81|1|B5|U|4258
7O81|1|B5|A|4259
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BO
- Ribosomal protein L13a
- Chain BV
- Ribosomal protein L23
Coloring options: