J3_7O81_047
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7O81|1|B7|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_047 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0972
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O81|1|B7|C|9
7O81|1|B7|C|10
7O81|1|B7|A|11
7O81|1|B7|U|12
7O81|1|B7|A|13
7O81|1|B7|C|14
*
7O81|1|B7|G|65
7O81|1|B7|G|66
*
7O81|1|B7|U|109
7O81|1|B7|G|110
Current chains
- Chain B7
- 5S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- eL21
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