3D structure

PDB id
7OBR (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC-SRP early complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GCAG*CGUAG*UCCGAC
Length
15 nucleotides
Bulged bases
7OBR|1|5|A|1613
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OBR_009 not in the Motif Atlas
Homologous match to J3_5TBW_005
Geometric discrepancy: 0.1607
The information below is about J3_5TBW_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_33851.1
Basepair signature
cWW-tSH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7OBR|1|5|G|1545
7OBR|1|5|C|1546
7OBR|1|5|A|1547
7OBR|1|5|G|1548
*
7OBR|1|5|C|1580
7OBR|1|5|G|1581
7OBR|1|5|U|1582
7OBR|1|5|A|1583
7OBR|1|5|G|1584
*
7OBR|1|5|U|1609
7OBR|1|5|C|1610
7OBR|1|5|C|1611
7OBR|1|5|G|1612
7OBR|1|5|A|1613
7OBR|1|5|C|1614

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain R
60S RIBOSOMAL PROTEIN EL19
Chain g
60S ribosomal protein L34
Chain p
eL43

Coloring options:


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