3D structure

PDB id
7OBR (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC-SRP early complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UCGGUC*GGAGU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OBR_013 not in the Motif Atlas
Homologous match to J3_5TBW_010
Geometric discrepancy: 0.1595
The information below is about J3_5TBW_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_70383.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

7OBR|1|5|U|2440
7OBR|1|5|C|2441
7OBR|1|5|G|2442
7OBR|1|5|G|2443
7OBR|1|5|U|2444
7OBR|1|5|C|2445
*
7OBR|1|5|G|2515
7OBR|1|5|G|2516
7OBR|1|5|A|2517
7OBR|1|5|G|2518
7OBR|1|5|U|2519
*
7OBR|1|5|A|2536
7OBR|1|5|A|2537

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain X
uL23
Chain g
60S ribosomal protein L34
Chain k
eL38
Chain l
eL39

Coloring options:


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