3D structure

PDB id
7OBR (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC-SRP early complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGG*CUGAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OBR_016 not in the Motif Atlas
Geometric match to J3_5J7L_044
Geometric discrepancy: 0.3817
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn 3-way junction
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

7OBR|1|5|C|3937
7OBR|1|5|G|3938
7OBR|1|5|G|3939
*
7OBR|1|5|C|4074
7OBR|1|5|U|4075
7OBR|1|5|G|4076
7OBR|1|5|A|4077
7OBR|1|5|C|4078
*
7OBR|1|5|G|4168
7OBR|1|5|G|4169
7OBR|1|5|A|4170
7OBR|1|5|C|4171
7OBR|1|5|A|4172
7OBR|1|5|G|4173

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain G
60S ribosomal protein L7a
Chain N
Ribosomal protein L15

Coloring options:


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