3D structure

PDB id
7OBR (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC-SRP early complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AGAAG*CC*GAAAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OBR_027 not in the Motif Atlas
Homologous match to J3_8P9A_058
Geometric discrepancy: 0.1435
The information below is about J3_8P9A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12393.2
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

7OBR|1|5|A|2598
7OBR|1|5|G|2599
7OBR|1|5|A|2600
7OBR|1|5|A|2601
7OBR|1|5|G|2602
*
7OBR|1|5|C|2737
7OBR|1|5|C|2738
*
7OBR|1|5|G|2742
7OBR|1|5|A|2743
7OBR|1|5|A|2744
7OBR|1|5|A|2745
7OBR|1|5|A|2746
7OBR|1|5|U|2747

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain g
60S ribosomal protein L34
Chain p
eL43

Coloring options:


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