J3_7OHT_003

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OHT_003 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3376

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7OHT|1|1|G|1230
7OHT|1|1|A|1231
7OHT|1|1|C|1232
*
7OHT|1|1|G|1256
7OHT|1|1|C|1257
7OHT|1|1|U|1258
7OHT|1|1|A|1259
7OHT|1|1|A|1260
7OHT|1|1|G|1261
7OHT|1|1|G|1262
*
7OHT|1|1|C|1277
7OHT|1|1|A|1278
7OHT|1|1|C|1279

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2