J3_7OHV_007
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CA*UAACU*AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OHV_007 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.2976
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OHV|1|1|C|1631
7OHV|1|1|A|1632
*
7OHV|1|1|U|1641
7OHV|1|1|A|1642
7OHV|1|1|A|1643
7OHV|1|1|C|1644
7OHV|1|1|U|1645
*
7OHV|1|1|A|1810
7OHV|1|1|G|1811
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L27-A
- Chain m
- Ribosome biogenesis protein ERB1
- Chain n
- Pescadillo homolog
- Chain t
- Ribosome biogenesis protein RLP7
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