J3_7OI0_004

3D structure

PDB id

7OI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta rbfA pre-30S ribosomal subunit class D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7OI0|1|A|U|871, 7OI0|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OI0_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1072

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7OI0|1|A|C|826
7OI0|1|A|U|827
7OI0|1|A|U|828
7OI0|1|A|G|829
*
7OI0|1|A|C|857
7OI0|1|A|G|858
7OI0|1|A|G|859
7OI0|1|A|A|860
7OI0|1|A|G|861
*
7OI0|1|A|C|868
7OI0|1|A|G|869
7OI0|1|A|U|870
7OI0|1|A|U|871
7OI0|1|A|A|872
7OI0|1|A|A|873
7OI0|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8