J3_7OI6_004

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7OI6|1|A|A|1335, 7OI6|1|A|U|1336

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OI6_004 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.2453

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7OI6|1|A|C|1334
7OI6|1|A|A|1335
7OI6|1|A|U|1336
7OI6|1|A|C|1337
*
7OI6|1|A|G|1362
7OI6|1|A|U|1363
7OI6|1|A|U|1364
*
7OI6|1|A|A|1378
7OI6|1|A|U|1379
7OI6|1|A|U|1380
7OI6|1|A|A|1381
7OI6|1|A|A|1382
7OI6|1|A|A|1383
7OI6|1|A|G|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain 1

rRNA methyltransferase 3, mitochondrial