J3_7OIC_002

3D structure

PDB id

7OIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

7OIC|1|A|G|248, 7OIC|1|A|G|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OIC_002 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1845

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OIC|1|A|C|245
7OIC|1|A|G|246
7OIC|1|A|A|247
7OIC|1|A|G|248
7OIC|1|A|C|249
7OIC|1|A|U|250
7OIC|1|A|A|251
*
7OIC|1|A|U|313
7OIC|1|A|A|314
7OIC|1|A|G|315
*
7OIC|1|A|C|331
7OIC|1|A|G|332
7OIC|1|A|A|333
7OIC|1|A|G|334

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial