J3_7OIF_017

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7OIF|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OIF_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.069

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7OIF|1|2|C|826
7OIF|1|2|U|827
7OIF|1|2|U|828
7OIF|1|2|G|829
*
7OIF|1|2|C|857
7OIF|1|2|G|858
7OIF|1|2|G|859
7OIF|1|2|A|860
7OIF|1|2|G|861
*
7OIF|1|2|C|868
7OIF|1|2|G|869
7OIF|1|2|U|870
7OIF|1|2|U|871
7OIF|1|2|A|872
7OIF|1|2|A|873
7OIF|1|2|G|874

Current chains

Chain 2

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21